Boutique hotel vacation rentals in San Juan Islands

Find and book unique boutique hotel rentals on Airbnb

Top-rated boutique hotel rentals in San Juan Islands

Guests agree: these boutique hotel rentals are highly rated for location, cleanliness, and more.

0 of 0 items showing

1 of 3 pages

Guest favorite

A modern guesthouse features a sloped roof and wooden exterior, set against a backdrop of tall evergreen trees. Large glass doors provide a view into the interior, blending harmoniously with the natural surroundings.

Hotel room in Friday Harbor

4.98 out of 5 average rating, 105 reviews

Private guesthouse immersed in nature

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Private deck & floor-to-ceiling windows with a cozy & intimate woodsy view. Wheelchair accessible. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

Guest favorite

A vibrant room features a spacious bed adorned with a floral quilt, complemented by a cozy seating area with a gray sofa. Natural light flows through two windows, and decorative lamps illuminate handcrafted wooden trim. A colorful area rug adds warmth to the wood flooring.

Hotel room in Friday Harbor

5 out of 5 average rating, 13 reviews

Pine room at Juniper Lane 2 beds

Our Pine room is perfect for two people traveling together that want their own beds and a little more privacy, with the separate bathroom, located just a few feet across from your door. The room has a queen bed as well as a twin bunk (the twin beds are built into the wall with beams and are solid and independent of each other). The Pine room has a lovely view of the valley, beautifully handcrafted trim details made of rare, high altitude old-growth cedar, and knotty pine wainscoting.

Top guest favorite

The hot tub is framed by natural wood beams, with light filtering through the surrounding trees, creating a warm ambiance. The gentle ripples of the water reflect the soft illumination from the nearby residence, enhancing the serene outdoor space.

Hotel room in Cobble Hill

5 out of 5 average rating, 153 reviews

Hot Tub, Sauna, Luxury. Welcome to Lavender View!

Serenity and quality abound. We want your stay at Lavender View to be EXCEPTIONAL. We offer luxurious accommodation in a resort-like setting on 2.5 acres. We take care of the fine details so you can simply relax and enjoy. We use the Airbnb platform exclusively to handle all of our reservations. However, we encourage you to visit our own website (Lavenderview dot ca). The “Book Now” button will take you back to this Airbnb listing to make your reservation.

The historic 1908 inn is depicted from above, featuring a striking red exterior and decorative architectural details. Surrounding greenery and mature trees create a serene backdrop, while additional structures are visible in the distance, indicating a spacious estate.

Hotel room in Port Townsend

4.56 out of 5 average rating, 279 reviews

Historic Innkeepers Apartment at winery

Private apartment at beautiful 1908 Inn at winery close to Port Townsend. Quiet setting 5 minutes to town. Main room includes kitchenette, dining area and couch that converts to a bed, the bedroom has a queen size bed, plus a laundry room, bathroom with claw foot tub, private entry, and private porch. Beautiful 12 acre estate with winery tasting room on site. Pets must be be pre-approved and must be in care of owners at all times and leashed when outdoors.

A spacious suite features a king bed nestled against the sloped ceiling, complemented by two floral armchairs. A gas fireplace is positioned within a wooden surround, enhancing the cozy atmosphere. Natural light enters through the window, illuminating the light-colored carpet and furniture.

Hotel room in Coupeville

4.95 out of 5 average rating, 22 reviews

Anchorage Inn - Room #7 - Crows Nest

This spacious suite claims the entire 3rd floor. It has a King bed for 2, living room w/gas fireplace and French doors opening onto a Juliet balcony, overlooking Penn Cove, Mt. Baker and the historic Coupeville. The private bath has an air jetted tub and shower. Find also a smart TV streaming, and fiber WiFi. Continental breakfast is available to all guests. Due to our rooms being individually unique, prices differ base on the room and seasonal prices.

Superhost

A cozy room is furnished with a queen bed adorned with a patchwork quilt. A wooden desk and chair are positioned nearby, with ambient lighting from two bedside lamps. Maritime-themed decor, including paddles and framed art, enhances the space, while a door leads to a private balcony.

Hotel room in Port Townsend

5 out of 5 average rating, 5 reviews

View of historic downtown Port Townsend

Wake up to views of downtown Port Townsend in our seaport boutique hotel! This second-floor room offers maritime-themed decor, one queen bed, and a full private bath. French doors open up to the balcony with two deck chairs. New eco-friendly initiatives yearly. Located in the heart of Port Townsend's cultural and historic district, the Swan is adjacent to Point Hudson Marina and just steps away from educational programs at the Northwest Maritime Center.

A cozy room features a wooden bunk bed with comfortable mattresses and a chair positioned by a large window. Natural light brightens the space, showcasing the earthy tones of the furnishings and the inviting view of greenery outside.

Hotel room in Friday Harbor

4.51 out of 5 average rating, 117 reviews

Wayfarers Guest House. Private, driftwood bunks #3

Thank you for finding the Wayfarers Rest, providing comfortable and convenient lodging for active travelers since 1999. Room 3 is a private room that can sleep up to 3, all linens provided. The common areas you will share with other guests (fully equipped kitchen, dining, living room and bathrooms) Wayfarers Rest is located just 4 blocks from the ferry terminal and two blocks from main St., easy walking. Free Wi-Fi, parking & chicken eggs. Pet friendly

Guest favorite

A serene studio space is highlighted by timber walls and large windows offering views of the water. A spacious bed is adorned with lavender-themed pillows. A round table sits in the center, complemented by a cozy seating area, creating a relaxing atmosphere.

Hotel room in Sequim

4.9 out of 5 average rating, 207 reviews

Lavender Cabin, Pvt Beach & View, Firepit (#4)

Cottage #4: Lavender Cottage • Views: Enjoy sunsets, seals, herons, and eagles soaring over the harbor. • Beach Access: Trail to private beach & kayak rentals right outside. • Amenities: Small kitchen, serene lavender surroundings, and a loveseat or bed for relaxation. • Location: Minutes from Lavender Farms, Game Farm, and 15 mins to town. • Panoramic Views: Relax and take in the beauty through large windows. •. This is a studio cabin

Superhost

The heritage building is surrounded by landscaped gardens and mature trees. A set of stone steps leads to the entrance, framed by greenery and flowers. The architecture features distinct elements, including a sloped roof and decorative windows, with a castle view visible in the background.

Hotel room in Victoria

4.73 out of 5 average rating, 145 reviews

Superior queen room #8

The Craigmyle is a heritage building. Elegant, inviting, and completely unique – The Craigmyle redefines boutique hotel living in the heart of Victoria, BC. Tucked away in one of the city’s gorgeous residential neighborhoods, just two minutes from the historic Craigdarroch Castle, our hotel places the city’s top attractions at your doorstep, while maintaining a sense of calm and tranquility that sure to relax and inspire you.

A queen-sized bed is centered in the room, partially covered with a beige and green comforter. Two wall-mounted lamps provide illumination beside the bed. A full-length mirror is positioned adjacent to a rustic, wooden wall. Light wooden flooring complements the cozy seating area with two chairs.

Hotel room in Port Angeles

4.88 out of 5 average rating, 120 reviews

#6 ✤Perfect Family Retreat- Olympic National Park✤

Our recently remodeled 2 bedroom suite is perfect for a getaway for two couples, or friends! Located in the heart Olympic National Park, each room features a comfy, queen-sized bed. The kitchenette includes a sink, mini-fridge, and microwave and makes for an ideal refreshment area. The full-sized and private bathroom can easily accommodate all guests. (Please note that there is no door between the two rooms.)

Guest favorite

A compact room features a queen size bed dressed in a burgundy coverlet. Wooden wall paneling surrounds the space, complemented by framed landscape artwork. A small dining table with chairs is visible, along with a lamp and a door leading to the outside.

Hotel room in Port Angeles

4.81 out of 5 average rating, 719 reviews

Angeles Motel - Small Room w Queen Bed

Hi, Welcome to Angeles Motel, We are not pet friendly and No Smoking motel, We have Free WIFI, cable TV, guests laundry room and parking lot on premises, Very close to National Park and ferry and 6 blocks away to downtown. We do not welcome the guests with bad reviews, We do not welcome the guests with no reviews, the Guests with bad reviews or with no reviews please try somewhere else, Thanks!

Superhost

A spacious bedroom features a wooden four-poster bed with neutral bedding, complemented by a cozy gray sofa. Soft lighting illuminates the walls, which are painted in a calming blue shade. A framed artwork hangs above the bed, adding a touch of color.

Hotel room in Lopez Island

4.91 out of 5 average rating, 107 reviews

•Sweet Island Hotel• Fireplace, Soaking Tub, WIFI

✔ Super Fast WIFI ✔ Fireplace ✔ In Room Coffee + Decaf & Tea ✔ Full Bathroom w. Soaking Tub ✔ 24/7 Staff That There When You Need Them and Never When You Don't :) ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ Onsite Bicycle and Kayak rentals We think of every aspect of your stay, and our staff is always there when you need us and never when you don’t.