Waterfront vacation rentals in Houston County

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Top-rated waterfront rentals in Houston County

Guests agree: these waterfront rentals are highly rated for location, cleanliness, and more.

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Guest favorite

The exterior of the houseboat is showcased, featuring a sleek black and white design. Flags are displayed along the railing, and a large umbrella provides shade over the deck area. The boat is docked alongside other vessels in a marina setting, with a calm water surface visible.

Houseboat in La Crosse

4.88 out of 5 average rating, 24 reviews

b3 FIVE7 Yacht

Luxury at its finest on the Mississippi River. Enjoy top end, modern amenities aboard an impeccably furnished houseboat. Enjoy all that a riverfront retreat has to offer aboard the b3 FIVE7 yacht. Please note this is just a place to stay and relax, you are not allowed to take the yacht out of the slip. **We also rent separately a Seadoo Sparx personal watercraft to enjoy during your stay for $150/day or a Seadoo Switch 5 person pontoon for $300/day. Rental agreement via Docusign required**

Guest favorite

The A-frame cabin features a wooden exterior with large windows and a balcony overlooking the surrounding greenery. Two sets of outdoor chairs are positioned on the patio, and a swing is visible in the yard, creating a serene outdoor space.

Cottage in Stoddard

4.88 out of 5 average rating, 72 reviews

Riverview Cabin home!

Your Riverview oasis is now here! A-frame cabin overlooking the Mississippi River between Genoa and Stoddard, only 12 minutes from southside La Crosse! Beds and baths on all 3 levels. Walk-out basement has spacious family room with fireplace, BR, bath, sleeper sofa, TV. Main level features 2 BRs, bath, fireplace, TV and full kitchen with private deck and outstanding views. Upper level has private master suite. Private 3+ acres with abundant wildlife and sunsets to die for! 2-car garage access!

Top guest favorite

A charming waterfront retreat exterior is shown against a colorful sunset. The brightly painted house features large windows and a spacious deck. Neatly landscaped grounds include green grass and a few planters. An American flag adorns the side of the building, adding a welcoming touch.

Home in La Crosse

5 out of 5 average rating, 13 reviews

Rustic Waterfront w/BOAT DOCK!

Escape to our cozy riverside getaway! Sleeps 10 with private dock and direct water access. Sway in the hammock, fire up the large Blackstone griddle, or rent kayaks for an adventure! Perfect for fishing, lounging, and exploring local fun, this cozy waterfront home offers comfort, convenience, and unforgettable memories along the river. FULLY STOCKED •250 ft to Waterfront Restaurant/Bar •0.4 mi to Bait Shop •0.8 mi to Public Boat Launch •1.5 mi to Gym •3.0 mi to Historic Downtown La Crosse

Guest favorite

The image captures a serene sunset over the water, framed by the branches of two trees. The sky displays a gradient of warm colors, reflecting on the calm surface of the Mississippi River. A small boat is visible on the water, contributing to the peaceful scenery.

Home in Stoddard

4.75 out of 5 average rating, 182 reviews

Mississippi River Shore- Fisher & Nature Delight 3

Mississippi River Shores, Sunset, & Fisher's Delight On The Water. Front yard is stone throw to river. Relax in a lawn chair under shade trees, steps to shoreline dock. Enjoy your morning brew. Grill dinner enjoying breathtaking sunsets and barge traffic. Eagles, blue herons, river otters, muskrats, and sucks. Serenity & peace. A fisher's delight! Public boat launch two blocks away. Private parking for boat trailers. Quiet & peaceful mobile home park of mainly secondary vacation homes.

Top guest favorite

An aerial view captures the cabin surrounded by expansive greenery and trees. The tranquil waters of the river are visible in the background, with soft hills rising in the distance. The layout showcases nearby structures and open areas, providing a sense of space and tranquility.

Cabin in Stoddard

4.96 out of 5 average rating, 147 reviews

Rustic River Cabin

Enjoy the rustic charm of this quaint, simple cabin. A safe and short walk to the river and shared boat dock. On a quiet dead end road. Outdoor firepit with wood supplied. Cabin details: Family-friendly space. Stocked kitchen with coffee bar items. Full bathroom with tub, 1 bedroom, open concept dining/living area. Living area equipped with a full/twin bunk bed. Stoddard: Rocky's Supper Club (Wed-Sat), Thursty Turtle Bar and Kwik Trip. Public boat ramp and park just down the road.

Top guest favorite

A scenic view of the Mississippi River is framed by lush green foliage. Two boat docks are visible, one equipped with boats, while the other offers a spacious platform. The calm water reflects the surrounding trees, creating a serene riverside atmosphere.

Apartment in La Crosse

4.98 out of 5 average rating, 90 reviews

Waterfront Mississippi River Retreat

River Retreat is on the Mississippi River minutes from UWL, Viterbo, WWTC, Mayo and Gundersen Health Systems. Explore the magic of the Mississippi River. Bike ride on many nearby trails. Enjoy the Driftless Region. Spend time sunning on the boat dock, while reading/enjoying an evening bonfire on a private guest deck. The property is located in a Wildlife Refuge where you will likely see eagles, osprey, herons, egrets, beaver, mink and our resident otters Otis and Olive. Create memories.

Top guest favorite

A spacious living area features large windows offering views of the Mississippi River Valley. Comfy furniture, including a sectional sofa and accent chairs, is arranged around a central coffee table. Soft colors create a serene atmosphere, complemented by natural light streaming through the windows.

Home in Genoa

5 out of 5 average rating, 108 reviews

Gathering Waters: Stunning River Views

Your peaceful oasis awaits. Unwind as you enjoy stunning views of the Mississippi River Valley from atop your secluded bluff top perch. Relax in the hot tub & take in the scenery as eagles soar below. Open concept stylish space with ample room for gathering with famiily and friends. Sip coffee on the open deck as you watch river barges or enjoy a campfire under the stars. Easy access to the best the Driftless has to offer. Nearby public landing for boating, fishing, kayak, or canoeing!

A modern two-story home features large glass windows and a contemporary wooden exterior. The structure is set against a rocky hillside, with a ramp leading down to a private dock on the water. Sunlight brightens the scene under a clear blue sky.

Home in Brownsville

5 out of 5 average rating, 4 reviews

The River Escape

Kick back and relax in this calm, stylish space. Welcome to the Brownsville, MN River Escape. This is a modern, new construction home sitting on a quiet inlet on the Mississippi River. The River Escape brings elevated comfort to the river shore! Relax on the large patio with river views. Float your boat right up to the private dock. It is located minutes from a beach, sand bars, and many river destinations. This is the perfect location to partake in all that Bluff Country has to offer.

Top guest favorite

A spacious living room features large windows that offer views of the waterfront. Comfortable furniture, including a cozy sofa and armchairs, is arranged around a central coffee table. Soft natural lighting creates a warm ambiance, while a decorative wall piece adds visual interest.

Home in Brownsville

5 out of 5 average rating, 52 reviews

Mississippi waterfront getaway-Dogs Welcome!

Welcome to our fully sustainable non-toxic waterfront home on the great Mississippi River! Bring the whole family, including your dogs. We welcome well supervised children (strict due to the proximity of the water) and we welcome dogs of all sizes. We have converted this house to a self-sustaining home with solar panels and a heat pump. All linens and towels are organic and all cleaning products are safe and non-toxic. We provide biodegradable/cruelty-free bath products for guest use.

Guest favorite

The exterior of a modern home is presented, featuring a combination of red and light-colored siding. Large windows enhance natural light, while a gravel drive leads to the entrance. A few outdoor chairs and a small table are visible, surrounded by trees and green space.

Home in Brownsville

4.93 out of 5 average rating, 56 reviews

Auggie's River Home

This 2017 built home overlooks the beautiful Mississippi River. It is located 15 minutes from La Crosse WI, 15 miles from New Albin, and 27 miles from Lansing, IA. It is within a mile distance from a boat launch and about 3 miles of a public boat launch away Wild Cat Campground. This area is host to whitetail deer, wild turkeys, bass, northern pike, walleye, and various pan fish. Our home is right on the Mississippi River Trail for bike riders. (It is only available in summers.)

Guest favorite

A spacious backyard is visible, featuring a round firepit surrounded by several green chairs. The house is behind, with a picnic table and an umbrella seen on the patio. Lush grass and trees provide a natural setting, enhancing outdoor comfort.

Home in Stoddard

4.91 out of 5 average rating, 146 reviews

The River Shack

Available year round. Perfect for a family get away or for hunters and fishermen. Full kitchen, 2 tables set up for eating. Large carport for parking under or sitting under if it is raining, you don't have to be trapped inside. Enclosed porch that looks out over the Great Mississippi River. Every sunset is beautiful!! Seating outside, firepit (bring your own firewood), swingset and sandbox for little ones. Also has your very own bar & TV. FYI. Property is by the rail road tracks.

Guest favorite

A flag is gently waving in the breeze, positioned in front of a wooden deck. Lush greenery surrounds the area, with trees framing the view. A pathway guides towards a rustic wooden fence, adding a natural touch to the serene setting.

Cabin in Brownsville

5 out of 5 average rating, 9 reviews

Newly remodeled cabin w/ views

Enjoy a fully furnished home overlooking the mighty Mississippi River from the bluffs of Brownsville, MN. This ALL SEASONS rental is located in Houston County, rich in trout streams, ice fishing at Lawrence Lake (1mile), snowmobile trails, home of the white tail deer and wild turkey, bird watching, hiking, biking trails, and so much more. Make lifelong memories, enjoy the screened in porch, stargazing, or plethora of family oriented puzzles and games. Come explore SE Minnesota!